Contact

	 Dr Markus Gerstel MBCS MSc (Oxon), B.Sc. (TUM), BA (Hons) Math Stat (Open), Cert Legal Stud (Open)

Social   Mastodon:@markus@uxp.de

WWW      https://markus-gerstel.de

page last modified on 08.11.2022, 00:29:08

Publications

DIALS as a toolkit, G. Winter, J. Beilsten-Edmands, N. Devenish, Markus Gerstel, R. J. Gildea, D. McDonagh, E. Pascal, D. G. Waterman, B. H. Williams, G. Evans, 2022, Protein Science 31 232–250. open access (PDF)

Data Analysis Infrastructure for Diamond Light Source Macromolecular & Chemical Crystallography and Beyond, Markus Gerstel, A. Ashton, R. J. Gildea, K. Levik, G. Winter, 2019, ICALEPCS 2019, 1031–1035. open access (PDF)

How best to use photons, G. Winter, R. J. Gildea, N. G. Paterson, J. Beale, Markus Gerstel, D. Axford, M. Vollmar, K. E. McAuley, R. L. Owen, R. Flaig, A. W. Ashton, D. R. Hall, 2019, Acta. Cryst. D75 242–261. open access (PDF)

DIALS: implementation and evaluation of a new integration package, G. Winter, D. G. Waterman, J. M. Parkhurst, A. S. Brewster, R. J. Gildea, Markus Gerstel, L. Fuentes-Montero, M. Vollmar, T. Michels-Clark, I. D. Young, N. K. Sauter, G. Evans, 2018, Acta. Cryst. D74, 85–97. open access (PDF)

A Novel Dual Air-Bearing Fixed-Χ Diffractometer for Small-Molecule Single-Crystal X-ray Diffraction on Beamline I19 at Diamond Light Source, D. R. Allan et al., 2017, Crystals 7(11), 336. open access (PDF)

RNA protects a nucleoprotein complex against radiation damage, C. S. Bury, J. E. McGeehan, A. A. Antson, I. Carmichael, Markus Gerstel, M. B. Shevtsov, E. F. Garman, 2016, Acta. Cryst. D72, 648–657. open access (PDF)

Automated data analysis for X-ray diffraction experiments in chemical crystallography, Markus Gerstel, D. R. Allan, A. W. Ashton, P. V. Hathaway, H. Nowell, S. A. Barnett, M. R. Warren, G. Winter, 2015, Acta. Cryst. A71, s289.

Identifying and quantifying radiation damage at the atomic level, Markus Gerstel, C. M. Deane, E. F. Garman, 2015, J. Synchrotron Rad. 22, 201–212. electronic reprint (PDF)

Radiation Damage in Protein Crystallography: Susceptibility Study, Markus Gerstel, 2014; DPhil thesis. (open access; CC-BY-SA)

BDamage: Quantifying radiation damage in MX structures, Markus Gerstel, C. Deane, E. Garman, 2014, Acta. Cryst. A70, C317. open access (PDF)

Quantitative radiation damage studies in macromolecular X-ray crystallography, Markus Gerstel, N. Olekhnovich, J. Brooks-Bartlett, Z. S. Derewenda, C. M. Deane, E. F. Garman, 2013, Acta. Cryst. A69, s407–s408. open access (PDF)

Get the most out of your precious crystal with three dimensional dose modeling, O. B. Zeldin, Markus Gerstel, S. Brockhauser, J. Bremridge, E. F. Garman, 2013, Acta. Cryst. A69, s85. open access (PDF)

RADDOSE-3D: time- and space-resolved modelling of dose in macromolecular crystallography, O. B. Zeldin, Markus Gerstel, E. F. Garman, 2013, J. Appl. Cryst. 46, 1225–1230. electronic reprint (PDF)

Optimizing the spatial distribution of dose in X-ray macromolecular crystallography, O. B. Zeldin, Markus Gerstel, E. F. Garman, 2013, J. Synchrotron Rad. 20, 49–57. electronic reprint (PDF)

Models of Grammar Evolution: Evolving English, 2008, MSc. Thesis, Supervisors: Dr Stephen Clark, Oxford University Computing Laboratory and Prof. Jotun Hein, Department of Statistics, University of Oxford.

Oxford University Yearbook 2008, Picture Editor. Published by the Alumni Office, University of Oxford

Method and arrangement for supporting a user and a user group, 20.08.2007, US Patent Application 20090055753, together with co-inventors Manuela Schauer, Adriano Pastore, Bruno Bozionek, Ana Balevic. A result of the CDTM/Siemens MPD project "SIEMATE, A social travel guide".

Siemate – A Social Travel Guide, Manuela Schauer, Markus Gerstel, Adriano Pastore, 2007, published in: Effective Collaboration in Dynamic Communities with Service-Oriented Architectures, Ana Balevic, Bruno Bozionek, Bernhard Kirchmair, Nikolaus Konrad, Philip Mayrhofer, Patrick Nepper, Uwe Sandner (eds.), CDTM, München, 150p, ISBN 978-3-9808842-7-3

Implementierung eines CompactFlash-Treibers für PXA-Prozessoren und Integration in μnOS als Systemdienst, 19.06.2006, Bachelorarbeit, gekürzte Version. Betreuer: Prof. Dr. Uwe Baumgarten, TU München und Dipl.-Inf. Michael Haunreiter, Miray Software GbR.

Talks / Posters / Presentations

Quantifying Radiation Damage in Real Space, Markus Gerstel, C. M. Deane, E. F. Garman; Presented at the 24rd Congress and General Assembly of the International Union of Crystallography, 05.–12.08.2014, Montreal.

Cross-Validation in Crystallography, 30.04.2014; Presentation at group meeting

Quantifying Radiation Damage in Real Space, 10.04.2014, Markus Gerstel, C. M. Deane, E. F. Garman; Invited speaker at the 8th International Workshop on X-ray Radiation Damage to Biological Crystalline Samples, Hamburg.

Quantifying Radiation Damage in MX, 08.01.2014; Invited speaker at the 5th Red Kite Network meeting

RADDOSE-3D, 26.08.2013; Software demonstration at the Crystallographic Software Fayre, 28th European Crystallography Meeting.

Quantitative Radiation Damage Studies in MX, 25.-29.08.2013, Markus Gerstel, N. Olekhnovich, O. B. Zeldin, Z. S. Derewenda, C. M. Deane, E. F. Garman; Poster presentation at the 28th European Crystallography Meeting

Quantitative Radiation Damage Studies, 28.01.2013, Markus Gerstel, C. M. Deane, E. F. Garman; Poster presentation at the annual DTC symposium 2013

Beam Profiling on an in-house X-ray generator for radiation damage studies, 23.–27.09.2012, E. F. Garman, Markus Gerstel; Talk at the 20th Bruker AXS Users' Meeting, Bad Herrenalb

Understanding Specific Radiation Damage, 14.-16.03.2012, Markus Gerstel, Isaac Turner, C. M. Deane, E. F. Garman; Poster presentation at Seventh International Workshop on X-ray Radiation Damage to Biological Crystalline Samples

Hi-Throughput Colorectal Crypt Monoclonality Simulation, 24.03.2011, SysBio DTC, University of Oxford; Poster presenting the results of a one-week project on Chaste

Transmissible Spongiform Encephalopathies - Prion Diseases, 11.11.2010, SysBio DTC, University of Oxford. — Slides of the presentation together with Himadri Mukhopadhyay — Sources for Essay and Slides

Introductory Tutorial in Parallel Programming, with talks on OpenMP and Profiling, 25.–29.09.2009, together with Marcel Meyer and Stefan Wallentowitz, part of the doctoral seminar on Advanced Computing (course 20) of the 2009 Ferienakademie summer school, a joint venture of the Technische Universität München, Universität Erlangen-Nürnberg and the Universität Stuttgart.

Vortrag zu Virtualisierung und Live-Migration, als Teil des Seminars Databases in the Cloud am Lehrstuhl für Datenbanksysteme der TU München — Latexquellen.

Mikroprozessorpraktikum – Extended Spaceradio, 21.08.2007, Praktikum am Lehrstuhl für Rechnertechnik und Rechnerorganisation / Parallelrechnerarchitektur der TU München, zusammen mit Jörg B., Jörg B., Benjamin Frank und Richard Röttger: Das musizierende, Tetris-spielende DAB-Radio.

Trusted Computing / TCPA, 24.11.2005, als Teil des Seminars Digital Rights Management am Lehrstuhl für Grundlagen der Software-Zuverlässigkeit und theoretische Informatik der TU München — Vortragsfolien, Latexquellen.

Virtualisierungsansätze mit Schwerpunkt Xen, 10.11.2005, Fassung vom 02.02.2006, als Teil des Seminars Ansätze für Betriebssysteme der Zukunft am Lehrstuhl für Betriebssysteme und Systemarchitektur der TU München — Vortragsfolien, Latexquellen.

Abschlussvortrag TGI Großprojekt, 18.07.2005, Praktikum am Lehrstuhl für Rechnertechnik und Rechnerorganisation / Parallelrechnerarchitektur der TU München, zusammen mit Jörg Böhnel und Richard Röttger, et al.: Der musizierende, Apfelmännchen-malende 8-Bit-Plotter

Exact Sampling: Der Propp-Wilson-Algorithmus, 14.06.2005, als Teil des Proseminars Markovketten in der Algorithmik am Lehrstuhl für Effiziente Algorithmen der TU München — Vortragsfolien, Latexquellen.

page last modified on 07.01.2022, 22:16:44

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